Clarify what you really want to get from the visualization. Even if you can “visualize” it somehow, most likely you will just get a Ridiculogram. Be sure to clarify what information you want to get from the visualization. Cytoscape & Gephi are usually the standard tools (Gephi seems to be a bit faster but not well maintained) but it will be hard to visualize a graph with 10k or 100k nodes with these tools. Usually upper limit for the simple node-link viz is an order of 1k, when the graph is sparse.
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